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Home > Featured in Experts > Nutrition for Anxiety and Depression: The Gut-Brain Connection (Part 7)

March 24, 2025 By Staci Shacter

Nutrition for Anxiety and Depression: The Gut-Brain Connection (Part 7)

Nutrition- Gutbrain connection
Nutrition for Anxiety and Depression Series
  • Pt1- Combating Inflammation and Oxidative Stress
  • Pt2- Common Food Sensitivities
  • Pt3- Beyond Histamine and Common Allergies
  • Pt4- Addressing Common Deficiencies
  • Pt5- Tools for Preventing Deficiencies
  • Pt6- Supplements for Deficiencies
  • Pt7- The Gut-Brain Connection
  • Pt8 – Gut Inflammation, Leaky Gut, and Stress.
  • Pt9 – Blood Sugar’s Role
  • Pt10 – Genes & Lifestyle

Have you ever heard the saying, “You are what you eat”? Well, it turns out that your gut health plays a much bigger role in your mental well-being than you might think. The gut-brain connection has become a hot topic in science, and early research is revealing fascinating insights into how the microorganisms in our gut could influence everything from mood to anxiety and depression.

The Power of Your Gut Microbiome

The gut is home to trillions of microorganisms, including bacteria, fungi, and viruses. In fact, for every human cell in your body, there are about 10,000 to 100,000 billion microorganisms living in your gut. These microorganisms form a vast ecosystem known as the gut microbiome. It’s estimated that the genetic material within the microbiome is 150 times greater than the human genome itself (1)!

The majority of these microorganisms live in your large intestine, and they fall into three major groups: Bacteroides, Firmicutes, and Actinobacteria. While the composition of this microbial community is unique to each person, several factors can influence which species thrive in your gut, including:

  • Diet
  • Medications
  • Stress
  • Hormones
  • Infections
  • Genetics
  • Environment
  • Maternal gut bacteria

The Gut-Brain Axis: A Two-Way Street

The connection between your gut and brain isn’t one-sided. It’s a two-way interaction — both your brain influences your gut health, and your gut microbiome impacts your mental well-being. This interaction is known as the gut-brain axis, a concept that links the health of your digestive system with the functioning of your brain.

For instance, when mice were subjected to social stress, they showed reduced diversity in their gut microbiome (3). These findings suggest that stress could influence the composition of gut bacteria. Similarly, when certain bacteria in the gut are altered, they can influence behavior, brain development, and neurotransmitter activity, such as serotonin and dopamine, which are crucial for mood regulation (4-5).

How Gut Microbiota Can Influence Depression

The idea that gut health may affect mental health has gained traction, particularly in the case of depression. One aspect of this connection is the gut-brain axis. Bacteria in the gut play a crucial role in mental health by influencing neurotransmitter production and consumption. These microorganisms have the ability to produce or consume various neurotransmitters, such as serotonin, dopamine, and GABA, which are key to mood regulation, stress response, and overall brain function.

This interaction is part of the gut-brain axis, a complex communication network between the gut and the brain. The modulation of neurotransmitters by gut bacteria may impact emotional well-being and cognitive function, shedding light on how gut health influences mental health and highlighting the importance of maintaining a healthy microbiome for mental well-being (6).

One interesting link between gut bacteria and serotonin involves the amino acid tryptophan, a building block for serotonin. Some gut bacteria have been found to help convert tryptophan into serotonin, which can directly affect mood (39). In fact, studies have shown that the composition of your gut bacteria can influence serotonin metabolism and potentially contribute to conditions like depression.

The Role of Probiotics in Mental Health

Probiotics, the beneficial bacteria found in foods like yogurt or available as supplements, have shown promise in managing depression symptoms. Some studies suggest that specific probiotic strains, such as L. helveticus, Bifidobacterium longum, L. acidophilus, L. casei, and B. bifidum, may help reduce depression symptoms in both healthy individuals and those with major depressive disorder (MDD) (10-11). Probiotics have also been shown to be beneficial for anxiety (12).

Though still in its early stages, this research is exciting because it opens the door to using gut bacteria to potentially improve mental health. Some studies also suggest that probiotics might help reduce inflammation in the gut, which could be linked to improvements in mood disorders.

Research on fermented foods (which are high in probiotics) has shown mixed results. In some studies, higher quantities or more frequent consumption of fermented foods did not offer statistically significant benefits and, in some cases, may even have negative correlations with mental health (14-16). It’s important to note that correlation does not imply causation, but one possible reason for this negative association could be that fermented foods are rich in compounds that increase histamine levels. People who have difficulty clearing excess histamine might experience symptoms such as depression, anxiety, chronic nasal drip, asthma, sinus issues, bronchitis, eczema, rashes, swelling, allergies, insomnia, and digestive issues.

While many people with depression and anxiety do not have histamine intolerance, one study found that 35% of individuals with anxiety met the criteria for histamine intolerance, compared to just 1-3% of the general population (45). This is why if someone has anxiety along with multiple other histamine-related symptoms, histamine intolerance could be contributing to their anxiety. However, if anxiety is the only symptom they have, it wouldn’t be assumed to be a histamine issue. For individuals who struggle with histamine-related issues, it may be wise to avoid fermented foods.

In part 9 of this series, we’ll take a closer look at histamine intolerance, how to identify it, and ways to manage it.

Diet and Gut Health: The Role of Fiber and Phytochemicals

Of all the factors that shape your microbiome, diet plays a pivotal role. Research has shown that what we eat can dramatically shift the balance of gut bacteria. For example, studies have demonstrated that switching from a meat-heavy diet to a vegetarian one can lead to changes in gut bacteria within just one day (2). This suggests that the foods we consume directly shape the ecosystem of our gut.

A poor diet, especially one high in processed foods, doesn’t just affect your own gut microbiome — it can also have lasting effects on future generations. The imbalance caused by unhealthy food choices can lead to inflammation and changes in the microbiome that may be passed down through epigenetic alterations. This means that the way you nourish your gut today could influence the mental health and microbiome of your descendants (7). By improving your diet now, you’re not only supporting your own well-being but also helping to shape a healthier gut and mind for future generations.

To support a healthier gut microbiome, it’s important to embrace a diverse range of foods, and the Mediterranean diet is an excellent way to do this. Rich in plant-based foods like fruits, vegetables, whole grains, legumes, and nuts, this diet provides an abundance of dietary fiber, vitamins, minerals, and phytochemicals that help foster a diverse and thriving gut microbiota (8). Research has shown that food compounds like prebiotics, fiber, polyphenols, and fatty acids — key components of the Mediterranean diet — not only benefit the microbiome but also positively influence the gut-brain axis (13).

The Mediterranean diet emphasizes complex carbohydrates from whole foods, focusing on nutrient-rich options in contrast to the ultra-refined carbs found in the Standard American Diet (SAD).
Examples of complex carbs include:

  • Starchy root vegetables: Sweet potatoes, winter squashes, yucca, and plantains
  • Whole grains: Brown rice, quinoa, oats, farro, and barley
  • Fruits: Apples, bananas, berries, grapes, and peaches
  • Beans: Chickpeas, lentils, black beans, kidney beans, and peas

Why Complex Carbs Matter

Complex carbs are rich in vitamins, minerals, phytonutrients, and fiber — all of which support mental health. The fiber found in many complex carbs plays a crucial role in mental well-being. It helps regulate the gut microbiome, which, in turn, influences mental health. When gut bacteria break down fiber, they produce short-chain fatty acids (SCFAs), which are essential for various bodily functions. Low levels of SCFAs in the gut have been linked to sleep problems (43) and mental health issues like anxiety and depression (44).

Quick Tips for Better Gut Health and Mental Well-Being

  1. Eat a Gut-Friendly Diet
    Focus on a Mediterranean diet with plenty of plant-based foods, fiber, and healthy fats. Include prebiotics (garlic, onions) and high-fiber foods to support your gut.
  2. Add Probiotics
    Include probiotic-rich foods like yogurt or kefir to boost your gut health and mood. Consider supplements if needed.
  3. Avoid Inflammatory Foods
    Limit ultra-refined foods (i.e., white flour, white sugar, and artificial ingredients) to reduce inflammation.
  4. Use Antibiotics Only When Absolutely Needed
    Avoid unnecessary use of antibiotics as they can disrupt the gut microbiome. Only take them when prescribed by a healthcare professional for specific infections.
  5. Work with a Gastroenterologist and Nutrition GI Specialist
    Sometimes it’s essential to work with a gastroenterologist and nutrition specialist to identify the root cause of your gut issues and develop a path to address them.

By making these simple changes, you can support your gut health and enhance your mental well-being. In the next post, we’ll explore other key aspects of the gut-brain connection, including inflammation, leaky gut, and stress.

References:

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About Staci Shacter

Staci Shacter, MS, RD, LDN, is a registered dietitian, specializing in integrative nutrition and lifestyle strategies to support mental health, recovery, and digestive health, and has worked with FHE Health since 2018. A highly regarded expert in her field, Staci also serves as a columnist for FHE Health, offering practical, evidence-based insights on a wide range of topics related to diet, lifestyle, and mental well-being. Passionate about education, she loves empowering both the public and healthcare professionals with science-backed approaches to optimize immune function, digestive health, and mental wellness. She also provides continuing education to pharmacists through Nova Southeastern University, helping them integrate functional medicine nutrition principles in their clinical practice for more holistic patient care.

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